PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539366.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 129aa    MW: 14406.3 Da    PI: 10.4666
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539366.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1364.6e-422310495170
              YABBY  95 svssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        + +++++    + +++ e+p+  p  ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  KN539366.1_FGP002  23 NAPAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 104
                        222333345557788888998877678*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.9E-4016104IPR006780YABBY protein
SuperFamilySSF470951.18E-84297IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.2E-55396IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEQAASASLS SITGRSSSSC ASNAPAMQMP PAKPVQQEPE LPKNAPASAN RPPEKRQRVP  60
SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI HFGLMPDQGF KKTFKPQDYL  120
RTPYWPIHL
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539366.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622736.14e-81protein YABBY 4
SwissprotA2X7Q34e-82YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6684e-82YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0D3F8519e-80A0A0D3F851_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YVL29e-80A0A0D9YVL2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CP179e-80A0A0E0CP17_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GAC69e-80A0A0E0GAC6_ORYNI; Uncharacterized protein
TrEMBLI1P2J59e-80I1P2J5_ORYGL; Uncharacterized protein
STRINGOGLUM02G26190.12e-80(Oryza glumipatula)
STRINGOMERI02G24350.12e-80(Oryza meridionalis)
STRINGOS02T0643200-012e-80(Oryza sativa)
STRINGONIVA02G28110.12e-80(Oryza nivara)
STRINGORGLA02G0220100.12e-80(Oryza glaberrima)
STRINGOBART02G25670.12e-80(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-40YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]