PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539183.1_FGP017
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 81aa    MW: 9082.43 Da    PI: 8.3509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539183.1_FGP017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.8e-0543623655
                       S-STCHHHHHHHHHHHHHHH CS
                HLH 36 kKlsKaeiLekAveYIksLq 55
                       +  s a++L +Ave+Ik Lq
  KN539183.1_FGP017 43 RQTSTADMLDLAVEHIKGLQ 62
                       459****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-64277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-64276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASTSALEMA GMDRYLQLQH DQVPFKVRAK RGCATHPRSI AERQTSTADM LDLAVEHIKG  60
LQSQLQALKH EQEKCTCCSR P
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539183.1_FGP017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108332e-65AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
GenBankAP0041242e-65AP004124.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1669_F01.
GenBankAP0149582e-65AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-65CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.12e-47transcription factor bHLH128 isoform X1
RefseqXP_015625727.12e-47transcription factor bHLH128 isoform X2
SwissprotQ8H1021e-24BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0D9YUM18e-53A0A0D9YUM1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G23590.11e-53(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-27bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]