PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538881.1_FGP008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 242aa    MW: 28274.3 Da    PI: 10.3466
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538881.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-1297149855
                AP2   8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  KN538881.1_FGP008  97 RHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 149
                        5999**********888866656446*************************98 PP

2AP230.59e-10192226138
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++g 
  KN538881.1_FGP008 192 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGK 226
                        89****99**********99966...3.6*********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.59686157IPR001471AP2/ERF domain
PfamPF008477.6E-997149IPR001471AP2/ERF domain
SMARTSM003809.9E-1897163IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1497158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-1497157IPR001471AP2/ERF domain
PfamPF008479.6E-6192227IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-5192226IPR016177DNA-binding domain
SMARTSM003800.032193235IPR001471AP2/ERF domain
PROSITE profilePS510328.873193242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-4193226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVLAVKTKNA SRGTSYDITT LPLHLQSYRL TSTKKKLRTR SMCLLVTYTV QHVQFTSVTR  60
HIHMLHQIAN LLWRFQFYYL KYIRLLDEGP CSPALPRHRW TGRFEAHLWD KNSWNESQNK  120
KGKQVYLGAY DDEEAAARAY DLAALKYWGP DTILNFPLGA YEGELKEMEG QSREEYIGSL  180
RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGKRHAI ISDSDMIFKK  240
QF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.12e-87PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y62e-75WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLJ3MXL32e-87J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.16e-87(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-68AP2 family protein