PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538859.1_FGP013
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 337aa    MW: 37939.7 Da    PI: 8.5336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538859.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82e-2413101190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+   ++  + + +rtgC+a+l+++++k  +k ev+ ++  HnH+l+
  KN538859.1_FGP013  13 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 101
                        6******************************************9988..9999*******************9****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-2113101IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGMEFESEHE AYEFYRYYGW KVGFNVRKEY ANKSKKTGEI TSRKFACSRE GYRANVKRGN  60
HMVPMPDSRT GCNAHLVIRR KKPGAKLEVY AFQPRHNHPL FATSCMPNPL QPNVVHWTTL  120
PDAVTPPDLL MDRECEESYR VLDQCWVDLS NKVEEILQKQ TCVDATLTQT DVQNLKVSLP  180
SITNGTQAEN IMDKSSGTTA KESKKKGQKN KIQSRNCIEK GLRKKQKVHS EQPAEYALLG  240
GSQSGNMFQA FEGPPNMSPL GTQTPTYKTY RGIDLSSPMG PISYDEMPSG LDPTFTTHLG  300
FATYHTSQVS SSSPHNQQPD ENFCTKTSEL NNLHSSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0729980.0AK072998.1 Oryza sativa Japonica Group cDNA clone:J023143C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636420.11e-123PREDICTED: protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D9ZKQ70.0A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
STRINGBGIOSGA015115-PA1e-138(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.18e-18FAR1 family protein