PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538854.1_FGP022
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 319aa    MW: 34312 Da    PI: 9.204
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538854.1_FGP022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.16e-09178198121
               GATA   1 CsnCgttkTplWRrgpdgnkt 21 
                        Cs C+ttkTplWR+gp g+k+
  KN538854.1_FGP022 178 CSDCNTTKTPLWRSGPCGPKS 198
                        ******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.99E-5169196No hitNo description
SMARTSM004015.3E-4172212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.2E-7176197IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.077176195IPR000679Zinc finger, GATA-type
PfamPF003201.9E-6178198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QSYGDQGLRR  60
QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN  120
GSTSKWMSTP PVKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD  180
CNTTKTPLWR SGPCGPKSVA AAPVNNKPAA KKEKRAADVD RSLPFKKRCK MVDHVAAAVA  240
ATKPTAAGEA VAAAPKKDQD HVIVVGGENA AATAMPAQNP ISKAAAAAAS PAFFHGLPRD  300
EITDAAMLLM TLSCGLVHS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538854.1_FGP022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996070.0AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625859.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
SwissprotQ6YW480.0CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A0D3F2J70.0A0A0D3F2J7_9ORYZ; Uncharacterized protein
STRINGOBART02G08990.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.16e-11GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]