PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538727.1_FGP051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 695aa    MW: 75880.2 Da    PI: 7.7484
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538727.1_FGP051genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.63.2e-32446543298
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        +++r+ws+ De+v+L+Gli++++k+g+   +++di ++++++++++s++vs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l
  KN538727.1_FGP051 446 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSARVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQL 536
                        678************************888899***************************************999999.9************ PP

             DUF573  92 skkiWgs 98 
                        +kk+Wg+
  KN538727.1_FGP051 537 AKKVWGT 543
                        *****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5135215.06312139IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.103.2E-3722135IPR012336Thioredoxin-like fold
SuperFamilySSF528337.42E-3425133IPR012336Thioredoxin-like fold
CDDcd030011.07E-5330131No hitNo description
PfamPF000855.6E-2831129IPR013766Thioredoxin domain
TIGRFAMsTIGR011261.7E-3234132IPR005788Disulphide isomerase
PRINTSPR004213.9E-65058No hitNo description
PROSITE patternPS0019405169IPR017937Thioredoxin, conserved site
PROSITE profilePS5135213.958159290IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.101.4E-37161296IPR012336Thioredoxin-like fold
CDDcd030017.18E-55166282No hitNo description
SuperFamilySSF528335.8E-29168285IPR012336Thioredoxin-like fold
PfamPF000853.4E-24169281IPR013766Thioredoxin domain
PROSITE patternPS001940187205IPR017937Thioredoxin, conserved site
PRINTSPR004213.9E-6194203No hitNo description
PRINTSPR004213.9E-6248259No hitNo description
PfamPF045044.9E-27448542IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045454Biological Processcell redox homeostasis
GO:0005783Cellular Componentendoplasmic reticulum
GO:0009505Cellular Componentplant-type cell wall
GO:0016853Molecular Functionisomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MRHAVAAALL LVAAAVAASP VSALYSAGSP VLQLNPNNFK SKVLNSNGVV LVEFFAPWCG  60
HCQQLTPIWE KAAVVLKGVA TVAALDADAH KELAQEYGIR GFPTIKVFVP GKPPVDYQGA  120
RDVKPIVEFA LSQVKALLRD RLNGKTSAGS GGKKSGGSSE KTEPSASIEL NSQNFDKLVT  180
KSKDLWIVEF FAPWCGHCKK LAPEWKKAAK NLKGQVKLGH VDCDAEKNTN SSVWSVDKSY  240
RSLMSKYKVE GFPTILVFGA DKESPFPYQG ARVASAIESF ALEQLEANAA PPEVSELTGP  300
DAMEEKCASA AICFVSFLPD ILDSKAEGRN NFVWTAAGKQ ADLEKQVGVG GYGYPAMVAL  360
NVKKGAYAPL RSAFQLDEIT CLMTKPVSCS EFVKEAGRGG KGNLPLDGTP TIVQSEPWDG  420
KDGEVIEEDE FSLEELMADN SPHSKRPSRV WSQADELVIL RGLITYRTKR GVLPGSTQDI  480
GKLHSYIRGQ LSARVSTTQL SDKVRRLKQK YQMLATRAKT GKEVFPTPHD HNIYQLAKKV  540
WGTMSTAGEG GGSGYDNADA GESEEEQYGR ESDDDTESGR DNRHRKNQRS VPVTMANGNG  600
TGIGAVNAIV RGRSEFEKGK DVYPYLWETV EELSSQHPTG AVFKKAFELL EGSKAQVMEE  660
KLRKFRLTEM RQQLRRMDLM KDTLSMVLDA LEMAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3idv_A1e-383131710241Protein disulfide-isomerase A4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. {ECO:0000269|PubMed:21278127}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538727.1_FGP051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611801.10.0protein disulfide isomerase-like 2-3
SwissprotQ67UF50.0PDI23_ORYSJ; Protein disulfide isomerase-like 2-3
TrEMBLB8BCJ00.0B8BCJ0_ORYSI; Uncharacterized protein
STRINGOGLUM09G12830.10.0(Oryza glumipatula)
STRINGORUFI09G13320.10.0(Oryza rufipogon)
STRINGOBART09G12380.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-14DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Houston NL, et al.
    Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins.
    Plant Physiol., 2005. 137(2): p. 762-78
    [PMID:15684019]
  3. d'Aloisio E, et al.
    The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.).
    BMC Plant Biol., 2010. 10: p. 101
    [PMID:20525253]
  4. Onda Y, et al.
    Distinct roles of protein disulfide isomerase and P5 sulfhydryl oxidoreductases in multiple pathways for oxidation of structurally diverse storage proteins in rice.
    Plant Cell, 2011. 23(1): p. 210-23
    [PMID:21278127]
  5. Onda Y,Kawagoe Y
    P5-type sulfhydryl oxidoreductase promotes the sorting of proteins to protein body I in rice endosperm cells.
    Plant Signal Behav, 2013. 8(2): p. e23075
    [PMID:23299424]
  6. Onda Y,Kobori Y
    Differential activity of rice protein disulfide isomerase family members for disulfide bond formation and reduction.
    FEBS Open Bio, 2014. 4: p. 730-4
    [PMID:25161881]