PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01024215.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 84aa    MW: 9352.66 Da    PI: 11.0951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01024215.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-174684244
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak 44
                           +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+
  AMDW01024215.1_FGP001 46 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAR 84
                           8********.**********82....48**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-204684IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-144684IPR016177DNA-binding domain
SMARTSM003801.5E-104684IPR001471AP2/ERF domain
PfamPF008476.4E-114684IPR001471AP2/ERF domain
PROSITE profilePS5103219.1774684IPR001471AP2/ERF domain
PRINTSPR003671.5E-114758IPR001471AP2/ERF domain
CDDcd000181.55E-164984No hitNo description
PRINTSPR003671.5E-116984IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MDQCLGCEFF AGESGVVSFD GAEKVAAVAP AGAAAGQRRR RKKKNKYRGV RQRPWGKWAA  60
EIRDPRRAVR KWLGTFDTAE EAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1446841453Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743RRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01024215.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-117CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649367.11e-32ethylene-responsive transcription factor ERF109
SwissprotQ6K7E61e-19ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0E0LVV61e-31A0A0E0LVV6_ORYPU; Uncharacterized protein
STRINGOPUNC08G15760.12e-32(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-15ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]