PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G20000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 258aa    MW: 28832.2 Da    PI: 4.9995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G20000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-111832231055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  OGLUM11G20000.1 183 KRRRERINERLRILQQLVPNG-----TKVDISTMLEEAVQYVKFLQ 223
                      9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-13173232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-12182227No hitNo description
PfamPF000102.0E-8183223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDARCANIWS SADARSEESE MIDQLKSMFW SSTDAEINFY SPDSSVNSCV TTSTMPSSLF  60
LPLMDDEGFG TVQLMVSTGM DMCSDHQHQV ITGNKRMFPM DEHFEQQQKK PKKKTRTSRS  120
VSSSSTITDY ETSSELVNPS CSSGSSVGED SIAATDGSVV LKQSGNSRGH KQCSKDTQSL  180
YAKRRRERIN ERLRILQQLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDTWMFAPL  240
AYNGMNMDLG HTLAENQE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1183460.0AC118346.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697725.11e-136PREDICTED: transcription factor bHLH139-like
SwissprotQ84WK03e-43BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A0E0BLG70.0A0A0E0BLG7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J4L80.0A0A0E0J4L8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RBA30.0A0A0E0RBA3_ORYRU; Uncharacterized protein
STRINGOGLUM11G20000.10.0(Oryza glumipatula)
STRINGORUFI11G22390.10.0(Oryza rufipogon)
STRINGONIVA11G20620.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-32root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]