PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17730.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 211aa    MW: 23366.2 Da    PI: 6.3317
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17730.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-08333434
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+ +e+ ++ lfC  ++  lC++C ++ H
  OGLUM09G17730.2  3 TICDVCESAPAVLFCVADEAALCRSCDEKVH 33
                     68**************************998 PP

2zf-B_box27.95e-095291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  OGLUM09G17730.2 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                     6799*****************************6655556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000214.24E-8345No hitNo description
PfamPF006437.0E-7342IPR000315B-box-type zinc finger
SMARTSM003364.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.5275196IPR000315B-box-type zinc finger
PfamPF006434.6E-75291IPR000315B-box-type zinc finger
CDDcd000211.39E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCVAD EAALCRSCDE KVHMCNKLAR RHVRVGLADP NKVQRCDICE  60
NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQKD  120
PENRTDQKKA PHSVTKEQMA NHHNVSDDPA SDGNCDDQGN IDSKMIDLNM RPVRTHGQGS  180
NSQTQGVDVS VNNHDSPGVV PTCNFEREAN K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221720.0AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651327.11e-157PREDICTED: B-box zinc finger protein 18
SwissprotC0SVM51e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D3H9761e-157A0A0D3H976_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0B5L11e-157A0A0E0B5L1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IMN91e-157A0A0E0IMN9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QU521e-157A0A0E0QU52_ORYRU; Uncharacterized protein
TrEMBLB8BDX01e-157B8BDX0_ORYSI; Putative uncharacterized protein
TrEMBLQ651Z91e-157Q651Z9_ORYSJ; Os09g0527900 protein
STRINGBGIOSGA029398-PA1e-157(Oryza sativa Indica Group)
STRINGLOC_Os09g35880.11e-157(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-77DBB family protein