PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G11140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 478aa    MW: 52818.3 Da    PI: 5.3554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G11140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95e-331182571128
              NAM   1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 
                      lp+G++F+Ptd+el+++ L+k+  v +k    +++  +i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg rk+r+++     +
  OGLUM06G11140.1 118 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSISHFFHRTFKAYNTGIRKRRKINtgdlaD 208
                      799************99998862255555444233..2444422245**********.677777888******************866334446 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+k+v++ +g++ g+kk++v+y  + +  k+ekt+Wvmh+y+l
  OGLUM06G11140.1 209 VRWHKTGKTKPVVV-DGKHLGCKKIMVLYmsTMKGGKPEKTNWVMHQYHL 257
                      67************.999***********6534666777*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-38103276IPR003441NAC domain
PROSITE profilePS5100530.183118276IPR003441NAC domain
PfamPF023651.6E-14119257IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDAVQPSNAQ YKPRAPGLCA GVCVVSSPPP SPVRRLDLAL VGSLVGRGGL RLPAGGAGAA  60
MTGTSWIIDS HRIASKIKNA SGSVDASKHK WVSNPTKACP RCNHIIDNSD VVHQWPGLPR  120
GVKFDPTDQE LLWHLLAKHG KVGAKAHPFI DEFIPTVEED DGICYTHPQK LPGVKQDGSI  180
SHFFHRTFKA YNTGIRKRRK INTGDLADVR WHKTGKTKPV VVDGKHLGCK KIMVLYMSTM  240
KGGKPEKTNW VMHQYHLGTG EDEVEGQYVV SKLFFQQQFK PGEKNAQDLT SADALESIVA  300
EDLPNIPPLP LEEHVFTNQE LEVLEKSETI TDQGKETSEI NNEDNAVEDV AHMATEKPED  360
RDNPSSQDPK WWEGESQFLL DSQQLAENLA ICDEFLQSQS QTSCGGGDDE PDKIKPRLAV  420
YAQLPVEDLK KDLEECQRLD PSDGTNLELE NASEFRLSQI EFSQDSFTTA WAGGKVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604340.0AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640881.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-142NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0E0A7Y50.0A0A0E0A7Y5_9ORYZ; Uncharacterized protein
STRINGBGIOSGA022664-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-141NAC family protein