PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 212aa    MW: 22629.9 Da    PI: 4.5443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-181362255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+Wv+eIr p++   r r++lg+++t+eeAa+a +aa  +l+g
  OGLUM06G06520.1 13 KYRGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDTPEEAARAFDAAFVCLRG 62
                     8******99.**********933...5*********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-261278IPR001471AP2/ERF domain
CDDcd000183.44E-221379No hitNo description
PROSITE profilePS5103220.9561377IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-181365IPR016177DNA-binding domain
SMARTSM003802.4E-271383IPR001471AP2/ERF domain
PfamPF008479.0E-111357IPR001471AP2/ERF domain
PRINTSPR003674.9E-101425IPR001471AP2/ERF domain
PRINTSPR003674.9E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSSSSSSSAT ARKYRGVRLR KWGKWVSEIR LPNSRERIWL GSYDTPEEAA RAFDAAFVCL  60
RGGGAGGEAA GNGINFPDSP PAVARTSDPQ EVYAAAVSHA NNRPPPPPSA RATSSALPWE  120
EAPVVAAQEA AADMAPDVVV LPSSPVNVLA AAGSFEYWSQ QPLYSPTAAS LDLQRWMTAA  180
AAAEESIMED DDDEGTSDGL WSFHYSPTRS KW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642230.11e-126ethylene-responsive transcription factor ERF039
RefseqXP_025882167.11e-126ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0E0A6A61e-149A0A0E0A6A6_9ORYZ; Uncharacterized protein
STRINGOGLUM06G06520.11e-150(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-31ERF family protein