PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G01600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 604aa    MW: 64424.2 Da    PI: 6.3018
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G01600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.23.6e-1212045811374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 
                      lv++L++cA+ +s+g++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++     ++ ++al++++ ++Pi
  OGLUM06G01600.1 204 LVRALTACADSLSAGNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPI 297
                      6899*******************************************************************9989999**************** PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rLa++A++lg+ fef++ v++
  OGLUM06G01600.1 298 PRFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA-VVD 386
                      ***********************************************************....9**************************.7** PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklp 276
                      rled++l++L+vk+gE++aVn+vl++hrll+++++l++    +L l +s+ ++++ + e+e    ns+++ +rf++al+yy+a fd++ +a+lp
  OGLUM06G01600.1 387 RLEDVRLWMLHVKRGECVAVNCVLAMHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdAAGLP 476
                      **********************************9999....*******************8777***********************9999** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgW 362
                      ++s +r+k E++ ++rei+n+va eg er+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +        ++l+l W
  OGLUM06G01600.1 477 EASPARAKAEEM-FAREIRNAVAFEGPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHgggggggGEALTLRW 569
                      ************.*******************************9679**********************888****99888888677888*** PP

             GRAS 363 kdrpLvsvSaWr 374
                       d+pL++v+aW+
  OGLUM06G01600.1 570 LDQPLYTVTAWT 581
                      ***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.179178554IPR005202Transcription factor GRAS
PfamPF035141.2E-118204581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MSTAQRFDIL PCGFSKRGSR GDGAAPRVAG DARSGATTCS FRTHPAPPVT QSVSWGAKPE  60
PGGNGNGAHR AVKRAHDEDA VEEYGPIVRA KRTRMGGDGD EVWFHQSIAG TMQATAAGEG  120
EEAEEEKVFL VPSAAAFPHG MAAAGPSLAA AKKEEYSKSP SDSSSSSGTD GGSSAMMPPP  180
QPPEFDARNG VPAPGQAERE ALELVRALTA CADSLSAGNH EAANYYLARL GEMASPAGPT  240
PMHRVAAYFT EALALRVVRM WPHMFDIGPP RELTDDAFGG GDDDAMALRI LNAITPIPRF  300
LHFTLNERLL REFEGHERVH VIDFDIKQGL QWPGLLQSLA ARAVPPAHVR ITGVGESRQE  360
LQETGARLAR VAAALGLAFE FHAVVDRLED VRLWMLHVKR GECVAVNCVL AMHRLLRDDA  420
ALTDFLGLAR STGATILLLG EHEGGGLNSG RWEARFARAL RYYAAAFDAV DAAGLPEASP  480
ARAKAEEMFA REIRNAVAFE GPERFERHES FAGWRRRMED GGGFKNAGIG EREAMQGRMI  540
ARMFGPDKYT VQAHGGGGGG GGEALTLRWL DQPLYTVTAW TPAGDGAGGS TVSASTTASH  600
SQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-362045804374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642887.10.0PREDICTED: scarecrow-like protein 28
RefseqXP_015642886.10.0PREDICTED: scarecrow-like protein 28
TrEMBLA0A0E0A4E70.0A0A0E0A4E7_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g03710.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-115GRAS family protein