PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 212aa    MW: 22326.2 Da    PI: 6.2715
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-1296176489
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 
                      ++ +s+v    ++v+p++fa      + ++ t    + +grsW +++  ++++    l++GW++F+ +n+L+ gD +vF+l  g  +
  OGLUM04G10060.1  96 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 176
                      677899999999********433...3333.44446789********..88888899***********************5423222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1590190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1590189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-1391189No hitNo description
PROSITE profilePS5086312.49293191IPR003340B3 DNA binding domain
PfamPF023622.8E-994176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI  60
AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS  120
RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER  180
VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199990.0AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635251.11e-150B3 domain-containing protein Os04g0386900
SwissprotQ7XLP41e-151Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0D9ZJY61e-149A0A0D9ZJY6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GZV71e-149A0A0E0GZV7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8991e-149A0A0E0P899_ORYRU; Uncharacterized protein
STRINGOGLUM04G10060.11e-150(Oryza glumipatula)
STRINGORUFI04G11550.11e-150(Oryza rufipogon)
STRINGONIVA04G08240.11e-150(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]