PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G35980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 210aa    MW: 22700.3 Da    PI: 6.6763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G35980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-171667156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ykGVr++k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa   l+g+
  OGLUM02G35980.1 16 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 67
                     59*****998.**********933...5********************98888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-231679No hitNo description
SuperFamilySSF541711.83E-181779IPR016177DNA-binding domain
SMARTSM003801.1E-281783IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-261779IPR001471AP2/ERF domain
PROSITE profilePS5103221.7991777IPR001471AP2/ERF domain
PfamPF008471.2E-101765IPR001471AP2/ERF domain
PRINTSPR003676.6E-91829IPR001471AP2/ERF domain
PRINTSPR003676.6E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSSPVAAS PPEMEKKYKG VRRRKWGKWV SEIRLPNSRD RIWLGSYDSP EKAARAFDAA  60
FVTLRGHGAA GADLNFPDSP PSCDARSSDP RQVQAAALSH ANRAHVTPQQ AAAALMSPPS  120
LSPPPGFATG SEVVAPAVRA DGSIDWRPVM AHPPPLYSPP GWGGGHAYDF LQPPPPSPPL  180
PSCDDDMVDV VDESSASLWS FDTRDYYFRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042570.0AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624935.11e-148ethylene-responsive transcription factor ERF018
TrEMBLA0A0D9YZ921e-148A0A0D9YZ92_9ORYZ; Uncharacterized protein
STRINGOGLUM02G35980.11e-149(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-33ERF family protein