PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G28580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 618aa    MW: 64242.6 Da    PI: 9.1169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G28580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25.1e-922546182374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL e+A av++g++++a +lL+ l+  a+p+gd+ qRl+a+++ AL++r+           p+++ ++  s e+ a  +l+++vsP++ ++ 
  OGLUM02G28580.1 254 RQLLSEAAAAVADGNHTAAASLLSALKLSANPRGDAEQRLVAMMVAALSSRVGT--------GPSQHLADLYSGEHRATCQLLQDVSPCFGLAL 339
                      689*************************************************98........5556666556888889999************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185
                        aN aIl+av+g++++H +Dfd+s  +Q +aL++aLa+R+ ++ sl++T+v++p+s      +++l +t erL+k+A++ g++f+f++ v+ r
  OGLUM02G28580.1 340 HGANLAILDAVAGHRAIHLVDFDVSA-AQHVALIKALADRRVPATSLKVTVVADPTSPftpaMTQSLAATCERLKKLAQQAGIDFRFRA-VSCR 431
                      ************************85.8**************************9988899999*************************.7899 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        ++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+ l P+vv++veqe+++n+++ ++rf++a  +y a+++sl+a+l+r+s
  OGLUM02G28580.1 432 APEIEASKLGCEPGEALAVNLAFTLSRVPDESVSPANPRDELLRRVRALGPRVVTLVEQELNTNTAPMAARFSDASAHYGAVLESLDATLGRDS 525
                      ********************************************************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       +r+  E++ l+ ++ n v  eg +r+er+e ++kWr+r+++aGF++v+++e++   +++ l       + v+ ++g l  gW++r ++++SaW
  OGLUM02G28580.1 526 ADRTRAEAA-LASKVANGVGREGPDRVERCEVFGKWRARFGMAGFRAVAIGEDIGGRVRARLGPAL-PAFDVKLDNGRLGVGWMGRVVTVASAW 617
                      ********9.9***************************************************9998.66************************* PP

             GRAS 374 r 374
                      r
  OGLUM02G28580.1 618 R 618
                      8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.737227599IPR005202Transcription factor GRAS
PfamPF035141.8E-89254618IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MDPAGAPWCD PRRGYGGYGV GSAALQAAAR QQSQQPRSDG AGGAGVTGGV LKRSLGEMER  60
WQQQRQVAAQ QAMYLRSVRQ RMDIGAVLGG AASSPAYGIS GLSSGFGGIS QQQPSSTMSS  120
LTTASRTVMP GMQQQRRMMA VPTPQNQAVA RAPAARPATA TELVLLQELE KQLLGDDEEA  180
DAAGSGCGSG ITSSDWGDTI QRLNSVTAAS SPSLPLPTVV NSTALLARSP TNSSSSTASS  240
SASSSPPISA ASSRQLLSEA AAAVADGNHT AAASLLSALK LSANPRGDAE QRLVAMMVAA  300
LSSRVGTGPS QHLADLYSGE HRATCQLLQD VSPCFGLALH GANLAILDAV AGHRAIHLVD  360
FDVSAAQHVA LIKALADRRV PATSLKVTVV ADPTSPFTPA MTQSLAATCE RLKKLAQQAG  420
IDFRFRAVSC RAPEIEASKL GCEPGEALAV NLAFTLSRVP DESVSPANPR DELLRRVRAL  480
GPRVVTLVEQ ELNTNTAPMA ARFSDASAHY GAVLESLDAT LGRDSADRTR AEAALASKVA  540
NGVGREGPDR VERCEVFGKW RARFGMAGFR AVAIGEDIGG RVRARLGPAL PAFDVKLDNG  600
RLGVGWMGRV VTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-372496181375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244260.0AY224426.1 Oryza sativa (japonica cultivar-group) isolate 20145 scarecrow transcriptional regulator-like protein mRNA, complete cds.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0041780.0AP004178.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1123_G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623156.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A0D9YWH40.0A0A0D9YWH4_9ORYZ; Uncharacterized protein
STRINGORGLA02G0240700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-93SCARECROW-like 8