PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G23590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 275aa    MW: 27898.8 Da    PI: 7.4806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G23590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000332372563655
                      S-STCHHHHHHHHHHHHHHH CS
              HLH  36 kKlsKaeiLekAveYIksLq 55 
                      +  s a++L +Ave+Ik Lq
  OGLUM02G23590.1 237 RQTSTADMLDLAVEHIKGLQ 256
                      4489***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.43E-4231260No hitNo description
Gene3DG3DSA:4.10.280.103.8E-5235270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-5236269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMRRFLPVGG GGGGGVEPSS SSTTPQRGEA EAAGLRFGGG DISLGPHGGG GGGGGGHGHQ  60
LQDGSVDLLA RHSSSPAGFF SNLMASNGSK GGGGSGAEAH HHHHPPSMAG SGSGSSSGGR  120
KMKSQLSFTA GPPHLSHIAE DGAFPDRAGA EASVPRTFSA GGSSGGGGFS IVGPWEESRD  180
IISTLGGYES QFGGMASTSA LEMAGMDRYL QLQHDQVPFK VRAKRGCATH PRSIAERQTS  240
TADMLDLAVE HIKGLQSQLQ ALKHEQEKCT CCSRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-142transcription factor bHLH128 isoform X1
TrEMBLA0A0D9YUM10.0A0A0D9YUM1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G23590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-28bHLH family protein