PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G12910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 579aa    MW: 61206.9 Da    PI: 7.281
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G12910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.71.5e-13205294798
           DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      w+ +De+ +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  OGLUM02G12910.1 205 WTADDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 294
                      **************999999954..699***********98865538***********************9965.567889**********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.9E-19205293IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MARKRRAPTP PPPPPPPPPP EAESSADSSG EEEEGEEEER ESPAAPPPQK PSGRGAAAAA  60
SSDEDEEEED SDTDTYAQGF QLRKVGGGDE EGEEEEEGSG SSESEPEPGP VKKESAKKTK  120
AEAKKKRAAP EPAPSGKAKK AKPEKSAAAA PEPAPSLGKS KKAAKAEAAK AAAAEPAPST  180
GKANKSKSAP EPSPSSKSGK ALSRWTADDE VKILEVLVAH FKSHGTQLNV EGIIAAVGDS  240
LERKSIKYSD MYEKVRRLKQ RYEATAKKVE HGGDLPAKED DLRMYQLSSE IWGKNAKDAG  300
NSSKNKKGQA KKDKVSGDSK EAAKEDKVDE AATAVNEKGG TLAENKKGKT NKQKTGMETK  360
VGSSKEAALA ASPTKGKKKG SHKDKLDEEA KSGTAKVTST IATDDDGTLG GSKREKAGKE  420
ELDGDTHIVM PKEATTTAAR DDGTLVGSKK GKADNGKLDG DTHSVMPKEA TAGTQNGGIL  480
TGGENHKEKV DKDANVPSIR REYAELQSLY PNLASFVNGI EVQHPCGSTF KRAFEFISDD  540
KACTLESKIK KQKIAEVRMQ LRLADTKKEV ANALLGLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0neurofilament medium polypeptide
TrEMBLA0A0D9YQR80.0A0A0D9YQR8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G12910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737