PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 219aa    MW: 23615.7 Da    PI: 10.7326
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP64.63.7e-201762489
              TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........k 89
                     ++a+c a +F+L++ LG+++d++t++WLlqqa+ ai + tgt++++   + + +++ +  +++++           +
  OGLUM01G10550.1  1 MPALCVAWIFQLTRDLGHKSDGETVQWLLQQAELAIVATTGTGTIPVGGA-DRQQEDALPAEQIDavagepspcgrR 76
                     9*****************************************77777333.11111111112222333333334441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-14155IPR005333Transcription factor, TCP
PROSITE profilePS5136916.587139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MPALCVAWIF QLTRDLGHKS DGETVQWLLQ QAELAIVATT GTGTIPVGGA DRQQEDALPA  60
EQIDAVAGEP SPCGRRGRRS SPLRRVPASS GGPHTSHASG PSPGRALFGE REGGGERRVV  120
EERKNRNATY ILKMAQPSGI IVFLRSSPSP RRMQPAARHT FCSLFLQFSG NCGWVANPIS  180
NSAFPRAHRH THPATAAAAT TTTTRPPWTK EMRRESCCG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077891e-123AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBankAP0030741e-123AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBankAP0149571e-123AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y6041e-159A0A0D9Y604_9ORYZ; Uncharacterized protein
STRINGOGLUM01G10550.11e-159(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-20TCP family protein