PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G05410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 509aa    MW: 53266 Da    PI: 5.9487
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.3e-31268323156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OGLUM01G05410.1 268 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 323
                      68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.554265325IPR017930Myb domain
SuperFamilySSF466893.29E-17266326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28266326IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-26268323IPR006447Myb domain, plants
PfamPF002491.1E-6270321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MASSSSDLTL DDHHHLTAVA AASGQATQKL QEFLSRLEEE RLKIDAFKRE LPLCMQLLNH  60
AMEAYRQQLE AYQMGSQHGA AAAAAARAPL VLEEFIPVKN IGIDVVAADK AAAAAAGGNS  120
VSSEKASWMV SAQLWNAPAS ASAADTAAKG PQTPKEHSEH HPLDTSPKLI TALDGGGGGG  180
AFLPFSKDNA MGDGSAAAAA AALPELALAP AEKAADAITI AAGEVDKKPY AHDNGVVARS  240
REAQNGGKPP STPPDGQAVP PPPQPHRKAR RCWSPELHRR FVNALQILGG AQVATPKQIR  300
ELMKVDGLTN DEVKSHLQKY RLHTRRPMPS PAPPTAATPQ LVVLGGIWVQ PEYATQAAGP  360
AIYGAHPATQ PHYTAAVAAQ EYYHHHHHHL QHHPAAAALV HHRAVAPPPP LPPQQQLAPP  420
YSAKSSASAR LGSPDSDGRG SGGGAAAAAS GAGRDMSESI EEEGEGEERE DDDDYDEMAA  480
TNNAHAVDGD DDDDEINTTT TTSAGAINY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13268321154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13268321154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13268321154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13268321154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13268321255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098080.0AK109808.1 Oryza sativa Japonica Group cDNA clone:002-147-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631343.10.0transcription factor NIGTH1-like isoform X1
SwissprotQ5VRW20.0NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBLA0A0D9Y4200.0A0A0D9Y420_9ORYZ; Uncharacterized protein
STRINGOGLUM01G05410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.17e-39G2-like family protein
Publications ? help Back to Top
  1. Kamrul Huda KM, et al.
    Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins.
    Plant Physiol. Biochem., 2014. 82: p. 229-38
    [PMID:24992889]