PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0181700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 113aa    MW: 11790 Da    PI: 7.9954
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0181700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.51.8e-291987160
        ZF-HD_dimer  1 kekvrYkeClkNhAaslGghavDGCgEfmpsegee.gt........aaalkCaACgCHRnFHRreveee 60
                       +++vrY eC++NhAas+GghavDGC+Ef+++e+   g+        aaalkCaACgCHR+FHRr +++e
  ORGLA09G0181700.1 19 CCGVRYGECRRNHAASTGGHAVDGCREFIAAEDGGgGNstgavgvaAAALKCAACGCHRSFHRRVQVYE 87
                       5789***************************888855599*****99*****************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-31191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-262284IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-192382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.8862483IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MMKRLVVLRR REPAVRFSCC GVRYGECRRN HAASTGGHAV DGCREFIAAE DGGGGNSTGA  60
VGVAAAALKC AACGCHRSFH RRVQVYEVAW DDDCASGDTS SSSPSSSSSS SSE
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0181700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588400.0AK058840.1 Oryza sativa Japonica Group cDNA clone:001-004-D10, full insert sequence.
GenBankAP0056360.0AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8305760.0CT830576.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611485.13e-74mini zinc finger protein 2
SwissprotQ6ER222e-75MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBLA0A0E0B2X32e-74A0A0E0B2X3_9ORYZ; Uncharacterized protein
TrEMBLI1QNW62e-74I1QNW6_ORYGL; Uncharacterized protein
STRINGOGLUM09G10570.13e-75(Oryza glumipatula)
STRINGORGLA09G0074500.13e-75(Oryza glaberrima)
STRINGORGLA09G0181700.13e-75(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.16e-12mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]