PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0128800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 359aa    MW: 34290 Da    PI: 8.0653
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0128800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-3946105362
             zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+
  ORGLA07G0128800.1  46 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 105
                        57899****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3142102IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3348103IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.38549103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAGAGGAATA AAGGGGGGGV AAGRSGGGGG GGAAAAAGAG APDPRAEALR CPRCDSANTK  60
FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRSRSGGAA PGGGVGRGGP  120
GGGAAAAVSS AGGGAAGTSP ASSLALPQPG SLPSLSSALG LTGGTSLASL LLGSSGSGGD  180
HLGLFQAMQS VVSDAAAFEM HQQHQSQVDH LLGLGYGAAG AQIQAAKPWL HDGGATGGLL  240
DGFYAPLLSG SIVPGLEELQ VKAEATTGDH QQKSSAAAAG EQSWDLPTPS SSNVEASIIA  300
SDALMAAAAA SMNPAVSAAA ASTAPSAQSL LYWGNGGIGA AAAAWPDLAN CGSSIATLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0128800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038150.0AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647864.10.0dof zinc finger protein DOF5.4
TrEMBLI1QAZ60.0I1QAZ6_ORYGL; Uncharacterized protein
STRINGORGLA07G0128800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88953041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.18e-34TARGET OF MONOPTEROS 6