PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0028600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 446aa    MW: 47350.4 Da    PI: 9.4981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0028600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47e-40591982132
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.........eaesss 79 
                         g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++     ++ +as++               
  ORGLA07G0028600.1  59 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfPTHPASSAavaaaaappL----- 145
                        689*************************************************************77666222222222221112222..... PP

                TCP  80 ssasnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                                +       ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++   + 
  ORGLA07G0028600.1 146 --------PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 198
                        ........0222223356777779999**************************99877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3960194IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18961119IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.408178195IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQQHPAS RIYRVSRASG  60
GKDRHSKVYT AKGIRDRRVR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK AAAAAIDKLP  120
SLDTASFPTH PASSAAVAAA AAPPLPHAER EQQQQLTKSG CSSTSETSKG SVLSLSRSES  180
RVKARERARE RSSAAAAAAS KDAGDDAATP TAPTAAPASS QAASFTELLT GMAAANASPA  240
DHKQQQAWQP MTVAAATADY IGFAAAAAAP HTQPRKSAAG HHSAMPHTFA SPAPHLANIT  300
PIAMAPAQHF TLTPAAAEHH AEMTHYSFDH FMPVHAAAAA AAAASTPAGG DYNLNFSMSS  360
GLVGVHSRGT LQSNSQSHLS SHHHHHHQQQ QQQQQLQRLS APLDAPNIPF LFSPAAAPTA  420
ADTQFAAALQ LWDGFRHADI KEKGKH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0061630.0AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0037040.0AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644886.10.0PREDICTED: transcription factor PCF6
TrEMBLI1Q8440.0I1Q844_ORYGL; Uncharacterized protein
STRINGORGLA07G0028600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2