PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0121500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 223aa    MW: 23681.1 Da    PI: 7.5633
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0121500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer33.51e-101011203453
        ZF-HD_dimer  34 eegtaaalkCaACgCHRnFH 53 
                        e +++++lkCaACgCHRnFH
  ORGLA06G0121500.1 101 EPADPTSLKCAACGCHRNFH 120
                        44789*************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-499120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-899120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
XSXACLRQRQ QQQPTAAVAA AASMASARLH ASAQPAASSL ETWLRWSLCR LYPSVATAAT  60
STAGGGRRRD GVPGVPQEPR SEPGRTRAGR LRGVHAVVAG EPADPTSLKC AACGCHRNFH  120
CWLLEGSPPP PPPLALPAPP MPANVLHGQL HREEETPEVR LPGVDGDEFD NNSDGSEYYD  180
ERSVSPPSPP HLPAAVVHQP YYPSAQHMLL SLGSSGQAQR LPL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0121500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054490.0AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.11e-22zinc-finger homeodomain protein 9
SwissprotQ6ER211e-23ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLI1Q2521e-156I1Q252_ORYGL; Uncharacterized protein
STRINGORGLA06G0121500.11e-157(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2165755