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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0096700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 46943.4 Da PI: 4.9373 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107 | 2.3e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+++ L+k+ v +k +++ +i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg rk+r+++ ORGLA06G0096700.1 58 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtgdl 146 799************99998862255555444233..2444422245**********.677888899******************8663344 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g++ g+kk++v+y + + k+ekt+Wvmh+y+l ORGLA06G0096700.1 147 aDVRWHKTGKTKPVVV-DGKHLGCKKIMVLYmsTMKGGKPEKTNWVMHQYHL 197 4667************.999***********6534666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-38 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.219 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MTGTSWIIDS HRIASKIKNA SGSVDASKHK WVSNPTKACP RCNHIIDNSD VVHQWPGLPR 60 GVKFDPTDQE LLWHLLAKHG KVGAKAHPFI DEFIPTVEED DGICYTHPQK LPGVKQDGSV 120 SHFFHRTFKA YNTGIRKRRK INTGDLADVR WHKTGKTKPV VVDGKHLGCK KIMVLYMSTM 180 KGGKPEKTNW VMHQYHLGTG EDEVEGQYVV SKLFFQQQFK PGEKNAQDLT SADALESIVA 240 EDLPNIPPLP LEEHVFTNQE LEVLEKSETI TDQGKETSEI NDEDNAVEDV AHMATEKPED 300 RDNPSSQDPK WWEGESQFLL DSQQLAENLA ICDEFLQSQS QTSCGGGDDE PDKIKPRLAV 360 YAQLPVEDLK KDLEECQRLD PSDGTNLELE NASEFRLSQI EFSQDSFTTA WAGGKVID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060434 | 0.0 | AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640881.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-142 | NAC8_ARATH; NAC domain-containing protein 8 | ||||
TrEMBL | A0A0E0PW69 | 0.0 | A0A0E0PW69_ORYRU; Uncharacterized protein | ||||
STRING | ORGLA06G0096700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-144 | NAC family protein |