PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0096700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 418aa    MW: 46943.4 Da    PI: 4.9373
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0096700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.3e-33581971128
                NAM   1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                        lp+G++F+Ptd+el+++ L+k+  v +k    +++  +i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg rk+r+++    
  ORGLA06G0096700.1  58 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtgdl 146
                        799************99998862255555444233..2444422245**********.677888899******************8663344 PP

                NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+k+v++ +g++ g+kk++v+y  + +  k+ekt+Wvmh+y+l
  ORGLA06G0096700.1 147 aDVRWHKTGKTKPVVV-DGKHLGCKKIMVLYmsTMKGGKPEKTNWVMHQYHL 197
                        4667************.999***********6534666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3843216IPR003441NAC domain
PROSITE profilePS5100530.21958216IPR003441NAC domain
PfamPF023651.2E-1459197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTGTSWIIDS HRIASKIKNA SGSVDASKHK WVSNPTKACP RCNHIIDNSD VVHQWPGLPR  60
GVKFDPTDQE LLWHLLAKHG KVGAKAHPFI DEFIPTVEED DGICYTHPQK LPGVKQDGSV  120
SHFFHRTFKA YNTGIRKRRK INTGDLADVR WHKTGKTKPV VVDGKHLGCK KIMVLYMSTM  180
KGGKPEKTNW VMHQYHLGTG EDEVEGQYVV SKLFFQQQFK PGEKNAQDLT SADALESIVA  240
EDLPNIPPLP LEEHVFTNQE LEVLEKSETI TDQGKETSEI NDEDNAVEDV AHMATEKPED  300
RDNPSSQDPK WWEGESQFLL DSQQLAENLA ICDEFLQSQS QTSCGGGDDE PDKIKPRLAV  360
YAQLPVEDLK KDLEECQRLD PSDGTNLELE NASEFRLSQI EFSQDSFTTA WAGGKVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604340.0AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640881.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-142NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0E0PW690.0A0A0E0PW69_ORYRU; Uncharacterized protein
STRINGORGLA06G0096700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-144NAC family protein