PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0076500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 399aa    MW: 40037.2 Da    PI: 9.8127
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0076500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.51.9e-41652452137
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                        ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++    
  ORGLA06G0076500.1  65 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlr 156
                        789******************************************************************99998999999999888889999 PP

                TCP  89 ......................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137
                                                              +  +s+ +   s +s +  l+++  s   + a a+ +r+ r++++m+++++ +
  ORGLA06G0076500.1 157 laglagprfgggaraadawdrvvglgfggaadapssatS--SSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 245
                        99999999999999999**********999999986422..33335555566666556666644422333333566668888888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-4469245IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67571125IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDVTGDGGGG GRRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAQGELQVRT  60
KAAAPPKRTS TKDRHTKVDG RGRRIRMPAI CAARVFQLTR ELGHKTDGET IEWLLQQAEP  120
AVIAATGTGT IPANFTSLNI SLRSSGSSLS IPSHLRLAGL AGPRFGGGAR AADAWDRVVG  180
LGFGGAADAP SSATSSSSSP LLLSFHSGSV GLDVSPPSAS TSPAAADLSR KRRWEQEMQQ  240
QQQYQQQMAG YTQSQIPAGT VWMVPSSNAQ AAGGGAPPGG GGESIWTFPQ SGSGGGGGAA  300
TVYRGVPSGL HFMNFPATPM ALLPGGQQLG LAGAGGGGEG HPGILAALNA YRAQAAQPDA  360
GAAAQNGAQG SSQHRQHQHH GGAGGGGDER HESMSASDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0035130.0AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAK0642400.0AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641757.11e-164PREDICTED: transcription factor TCP15
TrEMBLI1Q0V20.0I1Q0V2_ORYGL; Uncharacterized protein
STRINGORGLA06G0076500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-43TCP family protein