PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0289500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 395aa    MW: 42227.7 Da    PI: 7.4259
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0289500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.91.1e-481182811136
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                        aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++  +++s c e++sss s++ ++++   
  ORGLA03G0289500.1 118 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQqhs 207
                        589**************************************************************..6666687666666666633333445 PP

                TCP  89 ..........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                                  k +++aa++k++++ a+++  ++kesrakar+rarert+ek+r+++++
  ORGLA03G0289500.1 208 npadrgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 281
                        6788899999999999*********77777777**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-44120277IPR005333Transcription factor, TCP
PROSITE profilePS5136934.132121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.264257274IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLPFFDSPSP MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA  60
TIASPVPAMH PFMDLELEPH GQQLAAAEEE DGAGRQGVDA GVPFGVDGAA AAAAAAAAAA  120
RKDRHSKIST AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN MSKAAIREIM  180
SDDASSVCEE DGSSSLSVDG KQQQQHSNPA DRGGGAGDHK GAAHGHSDGK KPAKPRRAAA  240
NPKPPRRLAN AHPVPDKESR AKARERARER TKEKNRMRWV TLASAISVEA ATAAAAAGED  300
KSPTSPSNNL NHSSSTNLVS TELEDGSSST RHNGVGVSGG RMQEISAASE ASDVIMAFAN  360
GGAYGDSGSY YLQQQHQQDQ WELGGVVYAN SRHYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4915570.0AB491557.1 Oryza barthii tb1 gene for teosinte branched 1, complete cds, strain: W0652.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630237.10.0PREDICTED: transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI21e-104TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLI1PEU90.0I1PEU9_ORYGL; Uncharacterized protein
STRINGORGLA03G0289500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.19e-23TCP domain protein 12