PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0078800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 267aa    MW: 30475.2 Da    PI: 8.0056
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0078800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.8e-19231091199
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  ORGLA03G0078800.1  23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 109
                        455669**********999999999***************77999999**************************998888..9999986 PP

2B347.92.3e-151682401487
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  ORGLA03G0078800.1 168 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 240
                        56889********988554..4555.5599*******9876667777*************************6654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-1913116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.15613110IPR003340B3 DNA binding domain
CDDcd100171.23E-1913108No hitNo description
Gene3DG3DSA:2.40.330.107.6E-2114112IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-1615110IPR003340B3 DNA binding domain
PfamPF023625.3E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-24151262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-16152243IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-5153262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351155262IPR003340B3 DNA binding domain
PfamPF023623.2E-13169240IPR003340B3 DNA binding domain
CDDcd100172.73E-10170236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus