PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0333700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 236aa    MW: 24165.1 Da    PI: 10.7618
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0333700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.41.4e-3931141295
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88 
                        a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s +s++ ++s +   
  ORGLA02G0333700.1  31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndll 121
                        789*************************************************************99999888755555555444444.3588 PP

                TCP  89 .................kaaksaa 95 
                                         +    ++
  ORGLA02G0333700.1 122 lpraapfilgkrlraadD----HT 141
                        887777777766533322....22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093791IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-3337131IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SNSTSNSNDL  120
LLPRAAPFIL GKRLRAADDH TTSPAPAPDA TAPTQAFWAL PARADFGQLW SFAAAPEMMV  180
AAAAAPAMPG EASAARVGNY LPMAQGNLNL LASFSGGPGG AGATAATGRP EEESAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0047760.0AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAK2407980.0AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627477.11e-168PREDICTED: transcription factor TCP7
SwissprotQ9FMX24e-77TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0E0GF941e-168A0A0E0GF94_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NN881e-168A0A0E0NN88_ORYRU; Uncharacterized protein
TrEMBLI1P5T11e-168I1P5T1_ORYGL; Uncharacterized protein
TrEMBLQ6K7P21e-168Q6K7P2_ORYSJ; Os02g0828566 protein
STRINGORGLA02G0333700.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-44TCP family protein