PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0237900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 303aa    MW: 30634.6 Da    PI: 7.2343
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0237900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof284.7e-0938594263
             zf-Dof 42 kGGalrnvPvGggrrknkksss 63
                       +GG+lrnvPvGgg+rknk+sss
  ORGLA02G0237900.1 38 EGGSLRNVPVGGGSRKNKRSSS 59
                       8*****************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-43856IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
FSLIFTLLFF FPLYFYLSPF PLLALISLCP XXXXXXXEGG SLRNVPVGGG SRKNKRSSSS  60
VVPSAAASAS TSAAVSGSVP VGLAAKNPKL MHEGAQDLNL AFPHHRGRAL QPPEFTAFPS  120
LESSSVCNPG GNLAAANGAG GRGSVGAFSA MELLRSTGCY VPLPQMAPLG MPAEYAAAGF  180
HLGEFRMPPP PQQQQQQQAQ TVLGFSLDTH GAGAGGGSGV FGACSAGLQE SAAGRLLFPF  240
EDLKPVVSAA AGDANSGGDH QYDHGKNQGG GGGVIGGHEA PGFWNSSMIG NGSSNGGGGG  300
GSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0237900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281300.0AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.
GenBankAK1208100.0AK120810.1 Oryza sativa Japonica Group cDNA clone:J023014F11, full insert sequence.
GenBankAK2874470.0AK287447.1 Oryza sativa Japonica Group cDNA, clone: J043016O04, full insert sequence.
GenBankAP0058850.0AP005885.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0657H12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627551.11e-112dof zinc finger protein 2 isoform X2
SwissprotB9F1L81e-113DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLI1P3230.0I1P323_ORYGL; Uncharacterized protein
STRINGORGLA02G0237900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]