PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0113900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 576aa    MW: 61242.9 Da    PI: 6.3808
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0113900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.91.3e-13198287798
             DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                        w+ +De+ +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg
  ORGLA02G0113900.1 198 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWG 286
                        **************999999954..699***********98865538***********************9965.567889**********9 PP

             DUF573  98 s 98 
                        +
  ORGLA02G0113900.1 287 K 287
                        5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-19198286IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEERESP VAPPPQKPSG RGAASSDEEE  60
EEEDSDTDTY AQGFQLRKVG GGDEEGEEVE GDSSESEPEP EPVKKESAKK AKAEAKKKRA  120
APEPAPSGKA KKAKPEKSSS AAAPEPAPSS GKSKKAAKAE AAKAAAAEPA PSTGKVSKSK  180
LAPEPSPSSK SGKALSRWTT DDEVKILEVL VAHFKSHGTQ LNVEGIIAAV GDSLERKSIK  240
YSDMYEKVRR LKQRYEATAK KVEHGGDLPA KEDDLRMYQL SSEIWGKNAK DAGNSSKNKK  300
GQAKKDKVSG DSKEAAKEDK VDEAAIAVNE KGGTLAENKK GKTNKQKTGM ETKVGLSKEA  360
ALAASPTKGK KKGSHKDKLD EEAKSGTAKV TSTIATDDDD DDDGTLGGSK REKAGKEELD  420
GDTHIVMPKE ATTTAARDDG TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG  480
ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC  540
TLESKIKKQK IAEVRMQLRL ADTKKEVANA LLGLLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0113900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041680.0AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0neurofilament medium polypeptide
TrEMBLI1NZI30.0I1NZI3_ORYGL; Uncharacterized protein
STRINGORGLA02G0113900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737