PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0361700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 410aa    MW: 42522.2 Da    PI: 9.0874
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0361700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.6e-4092169278
                        -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C vegC+adls++ ++yhrrhkvCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+
  ORGLA01G0361700.1  92 CSVEGCAADLSKCvRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 169
                        ***********9879************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-3384154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.48789167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-3790172IPR004333Transcription factor, SBP-box
PfamPF031107.3E-2992166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSG GGGGGGGGGG ALDLKLGAPT SWKTTTTVSA ASAAPAAVAP  60
PPPPPASSSS SAAAAGKRAR AGQGQQAAVP ACSVEGCAAD LSKCVRDYHR RHKVCEAHSK  120
TAVVTVAGQQ QRFCQQCSRF HLLGEFDEEK RSCRKRLDGH NKRRRKPQPD PLNPGNLFAN  180
HHGAARFTSY PQIFSTAASM SPQETKWPAN VVKTEAADVF QEPYYHALHL NGAGAATAAS  240
IFHHGGNKAR KHHFPFLTAD HGGGAAAASP LFGCQPFTIT PSSESRSSSS SRHSNGKMFA  300
HDGGLDNCAL SLLSDNPTPT AQITIPQPLV AGGGQYGGGG DVSLTGLSYV RMAGKDTSIL  360
AKSATTTATT ATTPTTTSAQ LQYHGYYHHH VSADQGSSDA AIQALPFSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-2882166184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149166KRSCRKRLDGHNKRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0625810.0AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611358.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ0JGI10.0SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLI1NUS70.0I1NUS7_ORYGL; Uncharacterized protein
STRINGORGLA01G0361700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-30SBP family protein