PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0345800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 693aa    MW: 71573 Da    PI: 7.067
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0345800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.3e-15281340155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  ORGLA01G0345800.1 281 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 340
                        57*******************666664478446*************************98 PP

2AP246.77.9e-15383434155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ORGLA01G0345800.1 383 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 434
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-17281350IPR016177DNA-binding domain
PfamPF008475.8E-12281340IPR001471AP2/ERF domain
CDDcd000183.12E-20281350No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15282349IPR001471AP2/ERF domain
PROSITE profilePS5103219.23282348IPR001471AP2/ERF domain
SMARTSM003801.6E-29282354IPR001471AP2/ERF domain
PRINTSPR003673.7E-6283294IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17383444IPR016177DNA-binding domain
PfamPF008479.8E-10383434IPR001471AP2/ERF domain
CDDcd000187.00E-23383444No hitNo description
Gene3DG3DSA:3.30.730.105.0E-18384443IPR001471AP2/ERF domain
SMARTSM003801.5E-33384448IPR001471AP2/ERF domain
PROSITE profilePS5103219.045384442IPR001471AP2/ERF domain
PRINTSPR003673.7E-6424444IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTAAGDS SAGDVCFNIP QDWSMRGSEL  60
SALVAEPKLE DFLGGISFSE QHHHGGKGGV IPSSAAACYA SSGSSVGYLY PPPSSSSLQF  120
ADSVMVATSS PVVAHDGVSG GGMVSAAAAA AASGNGGIGL SMIKNWLRSQ PAPQPAQALS  180
LSMNMAGTTT AQGGGAMALL AGAGERGRTT PASESLSTSA HGATTATMAG GRKEINEEGS  240
GSAGAVVAVG SESGGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFPVN NYEKELEEMK  360
HMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE  420
AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILDSAALPVG TAAKRLKDAE AAAAYDVGRI  480
ASHLGGDGAY AAHYGHHHHS AAAAWPTIAF QAAAPPPHAA GLYHPYAQPL RGWCKQEQDH  540
AVIAAAHSLQ DLHHLNLGAA AAAHDFFSQA MQQQHGLGSI DNASLEHSTG SNSVVYNGDN  600
GGGGGGYIMA PMSAASATAT AVASSHDHGG DGGKQVQMGY DSYLVGADAY GGGGAGRMPS  660
WAMTPASAPA ATSSSDMTGV CHGAQLFSVW NDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0345800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLI1NUB80.0I1NUB8_ORYGL; Uncharacterized protein
STRINGORGLA01G0345800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-119AINTEGUMENTA-like 5