PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0290300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 267aa    MW: 30268.8 Da    PI: 6.3521
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0290300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.6e-2190150257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+t+ ql++Le+ F + n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  ORGLA01G0290300.1  90 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 150
                        89*****************99**************************************97 PP

2Wus_type_Homeobox104.38.2e-3489152265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  ORGLA01G0290300.1  89 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 152
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1785155IPR009057Homeodomain-like
PROSITE profilePS5007114.83586151IPR001356Homeobox domain
SMARTSM003891.9E-1488155IPR001356Homeobox domain
SuperFamilySSF466892.01E-1889153IPR009057Homeodomain-like
CDDcd000861.33E-1390152No hitNo description
PfamPF000462.6E-1990150IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEWDKAKASS GEAVDDRGGG EGGLGYVKVM TDEQMEVLRK QISIYATICE QLVEMHRALT  60
AQQDSIAGMR LGNLYCDPLM VPGGHKITAR QRWTPTPMQL QILENIFDQG NGTPSKQKIK  120
DITAELSQHG QISETNVYNW FQNRRARSKR KQAALPNNNA ESEAEADEES PTDKKPKSDR  180
PLHQNIAMRD HNSERISEMH HFDMEHEQIR RMMYASNDSS SRSSGSLGQM SFYDNVMSNP  240
RIDHFLGKVE SPGSFPHMRS GESFDMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0290300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685850.0AK068585.1 Oryza sativa Japonica Group cDNA clone:J013151P17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626455.10.0WUSCHEL-related homeobox 8
SwissprotQ5QMM30.0WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0D3EVI20.0A0A0D3EVI2_9ORYZ; Uncharacterized protein
TrEMBLI1NSR30.0I1NSR3_ORYGL; Uncharacterized protein
STRINGORGLA01G0290300.10.0(Oryza glaberrima)
STRINGOBART01G35170.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-71WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]