PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G20750.1
Common NameLOC102702617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 601aa    MW: 67804.1 Da    PI: 5.1125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G20750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028569588322
                   ETTTTEEESSHHHHHHHHHH CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                   C+ Cg++F ++  L +H+  
  OB12G20750.1 569 CETCGRTFDSRNKLFSHLEE 588
                   *****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.63E-207113IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.7E-19777IPR001623DnaJ domain
SMARTSM002711.4E-15970IPR001623DnaJ domain
PROSITE profilePS5007616.4471078IPR001623DnaJ domain
CDDcd062571.03E-131067IPR001623DnaJ domain
PfamPF002261.1E-151175IPR001623DnaJ domain
PRINTSPR006251.8E-91230IPR001623DnaJ domain
PRINTSPR006251.8E-93045IPR001623DnaJ domain
PRINTSPR006251.8E-95070IPR001623DnaJ domain
SuperFamilySSF576671.28E-12295344No hitNo description
SMARTSM004514.7E-5299333IPR003604Zinc finger, U1-type
SMARTSM003557.3302326IPR015880Zinc finger, C2H2-like
PfamPF121711.7E-10302327IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280304326IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93567596IPR007087Zinc finger, C2H2
SMARTSM003555.6567591IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280569591IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MASAAAPKRC YYEVLGLPLD CSPTDIKLAF RRLALALHPD KQPPGSDTAA ATAALPELQH  60
AHSVLSDPQE RAYYDSHRSQ ILFTDTSSGG ARGASASPVP DLFSFFSASV FSGFSDSGRG  120
FYKVYGDVFD RVLAQELAYA RRMGMPADSV ATPPVIGNLD SPYAQATAFY NYWLGFGTVM  180
DFGWAAEWDA ARGENRRVRR LMEEDNKKAM RKARREYNDA VRGLAAFCKK RDKRMVDMAL  240
KRKAEEEKKK AEEMARKKEE ERRKKERVMA YQEPEWARVE EDEAGFEEDE EEEMKAKRKD  300
ELYCVACNKK FKSDKQWKNH EQSKKHRDKV AELRMVFEEE EEALKEAEEE LEEVDVGFDF  360
KPAQESEESD FSDAAEELAE ELSEGLEVRD EESDDVNMDN AEQKVGSYDE TSVLEEMLSR  420
RKNQNSGFVP LQEEASPRGA MGDGDEADTS YEINNVKKKG RRRRAAKKGQ GEGTCADNGQ  480
GMKSVIQPEE SRHDNDENGV DDKMEGPSSN EENASASKED QLKGKTGNTK KNKKNKKGTE  540
KSTAIPAEQK DTLKGKKQRE VSKAPSNDCE TCGRTFDSRN KLFSHLEETG HAMLKTRQKN  600
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247264KKKAEEMARKKEEERRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429140.0AK242914.1 Oryza sativa Japonica Group cDNA, clone: J090083H23, full insert sequence.
GenBankAK1095400.0AK109540.1 Oryza sativa Japonica Group cDNA clone:002-119-G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664045.10.0PREDICTED: DNAJ protein JJJ1 homolog
TrEMBLJ3NDL70.0J3NDL7_ORYBR; Uncharacterized protein
STRINGOB12G20750.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-105DNAJ heat shock N-terminal domain-containing protein