PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G24670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 93aa    MW: 9861.13 Da    PI: 4.5682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G24670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-0815561554
                  HHHHHHHHHHCTSCCC....TTS-.STCHHHHHHHHHHHHHH CS
           HLH 15 riNsafeeLrellPkas.kapskK.lsKaeiLekAveYIksL 54
                  ++ + +++L+  lP +s ++ ++K +s ae+L++A++YI+ L
  OB11G24670.1 15 QMAELMSKLQAALPANSlGEANGKqVSSAEVLQEACRYIRRL 56
                  678899*********6667777777***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.651156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-81474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-51556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-71559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
SSPPAAAAAA ATDEQMAELM SKLQAALPAN SLGEANGKQV SSAEVLQEAC RYIRRLHREA  60
DALSERLAEL LLQPSDRTIN GADASDLIRS LLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G24670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616700.12e-39transcription factor ILI2 isoform X1
SwissprotB8BLA31e-40ILI2_ORYSI; Transcription factor ILI2
SwissprotQ2R1J31e-40ILI2_ORYSJ; Transcription factor ILI2
TrEMBLJ3N9I12e-57J3N9I1_ORYBR; Uncharacterized protein
STRINGOB11G24670.13e-58(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170041112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.18e-18bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]