PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G19520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 263aa    MW: 28178 Da    PI: 6.6254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G19520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.8e-1085132455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OB11G19520.1  85 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 132
                   8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1779149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-1279136No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1781148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.80281131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-785132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1187137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAHDGFLGGG FHALQAPWPL PPPLPEPEKK AKKCKLSADA TANQDTKPLA GEAGHAGNGK  60
GKDVAVEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKAVM  120
LDEIINYVQS LQRQVEFLSM KLSTVNPQLD FDVDNFLPKD QPSEPSLPAP LSLPPPQPPL  180
SYSPECATPA AIGYSPSQGT AMQSVVASTK GFEMAPTFAS HGIPAPSSLD AFHSANSQAG  240
SCMQMWEDDL QSVVQMGFRG NAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G19520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370221e-72BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636601e-72BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268661e-72KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697652.11e-177PREDICTED: transcription factor bHLH49-like, partial
SwissprotQ9SRT21e-54BH062_ARATH; Transcription factor bHLH62
TrEMBLJ3N8160.0J3N816_ORYBR; Uncharacterized protein
STRINGOB11G19520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]