PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G17950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 294aa    MW: 31748.3 Da    PI: 5.6632
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G17950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1992.9e-61429327302
          GRAS  27 lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqG 122
                   + +laspdg+++qRla+ f+eALa  +    ++l++ l+  ++++    e++aa++ f  ++P+++++   aN  Ilea+++e   vH++D++ s  
  OB11G17950.1   4 VADLASPDGRSLQRLASAFAEALALYVIVPFHGLCRLLQLPQAAP--PGEVAAARHRFRGICPFVRIAGASANLSILEAMDNEeGVVHVVDLGGSDI 98 
                   5689*********************************98888875..7888899999*************************96778********** PP

          GRAS 123 lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrvkpgEalaVnlvlqlhrll.. 214
                    QW+ L + +a+Rp+gpp  lR+T+v++      + l++ +  L+  A++l+++f f+  v +++++l+    +L +  g +laV   lq+hrll  
  OB11G17950.1  99 NQWVELVRLFAARPRGPPgLLRVTVVNE----ADDVLSAAEGYLTAEAQRLDINFTFRR-VQSSIDALTgvGGALGIVAGQSLAVIANLQMHRLLay 190
                   **************888879********....89*************************.68888888522689*********************** PP

          GRAS 215 ..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivn 296
                                 + +++++ + d++L+++++lsPk++v++eqeadhn  ++  r+ +a++yy+alfd++e+++p  s  +r++vEr llg+ei++
  OB11G17950.1 191 rkearngkgpageqSAQHTMTTKADALLRAIRGLSPKLMVLTEQEADHNVDELQPRVWNAMNYYAALFDAVEESAPLVSpGDRASVERWLLGEEIRD 287
                   ************985666666678*****************************************************9999**************** PP

          GRAS 297 vvaceg 302
                   +v c g
  OB11G17950.1 288 IVVCVG 293
                   ****87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.4371294IPR005202Transcription factor GRAS
PfamPF035141.0E-584293IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRWVADLASP DGRSLQRLAS AFAEALALYV IVPFHGLCRL LQLPQAAPPG EVAAARHRFR  60
GICPFVRIAG ASANLSILEA MDNEEGVVHV VDLGGSDINQ WVELVRLFAA RPRGPPGLLR  120
VTVVNEADDV LSAAEGYLTA EAQRLDINFT FRRVQSSIDA LTGVGGALGI VAGQSLAVIA  180
NLQMHRLLAY RKEARNGKGP AGEQSAQHTM TTKADALLRA IRGLSPKLMV LTEQEADHNV  240
DELQPRVWNA MNYYAALFDA VEESAPLVSP GDRASVERWL LGEEIRDIVV CVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-16828933296GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638610.11e-91PREDICTED: scarecrow-like protein 3
TrEMBLJ3N7K90.0J3N7K9_ORYBR; Uncharacterized protein
STRINGOB11G17950.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-52scarecrow-like 3