PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G21040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 141aa    MW: 15203.3 Da    PI: 9.4279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G21040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-057292323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C +Cgk F  k + ++H +++
  OB09G21040.1 72 CRKCGKAFAVKGDWRTHEKNC 92
                  *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.77E-75590No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55690IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6217090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAAGCR NNIDHPRAKP LKDFRTLQTH  60
YKRKHGLKPF LCRKCGKAFA VKGDWRTHEK NCGKLCPRAS GGGHGALGGA AALDEDDDGA  120
VSDLDHDSSS SAAAAAAARS L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6269401e-147EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.
GenBankCP0126171e-147CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankAP0149651e-147AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572359.17e-70PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY13e-68ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLJ3MYM51e-101J3MYM5_ORYBR; Uncharacterized protein
STRINGOB09G21040.11e-100(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-64C2H2 family protein