PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G17420.1
Common NameLOC102717923
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 381aa    MW: 41372 Da    PI: 9.0524
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G17420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1546105155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e A +a++ a++k++g
  OB09G17420.1  46 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEEAAGRAYDLAALKYWG 105
                   78*******************888866656446**********99*************98 PP

2AP252.11.6e-16148199155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  OB09G17420.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 199
                   89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-1246105IPR001471AP2/ERF domain
CDDcd000183.14E-1746115No hitNo description
SuperFamilySSF541717.85E-1746115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-1547115IPR001471AP2/ERF domain
PROSITE profilePS5103220.08647113IPR001471AP2/ERF domain
SMARTSM003804.2E-2447119IPR001471AP2/ERF domain
PRINTSPR003674.5E-64859IPR001471AP2/ERF domain
CDDcd000181.88E-22148209No hitNo description
SuperFamilySSF541716.54E-18148209IPR016177DNA-binding domain
PfamPF008471.5E-12148199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-18149208IPR001471AP2/ERF domain
SMARTSM003801.7E-25149213IPR001471AP2/ERF domain
PROSITE profilePS5103218.36149207IPR001471AP2/ERF domain
PRINTSPR003674.5E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAKPRKNTAA TTNTGSRGRG AVAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF  60
EAHLWDKNSW NESQNKKGKQ VYLGAYDDEE AAGRAYDLAA LKYWGPDTIL NFPLSAYDDE  120
LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGAD GGVGAAQNPH PMLGGLSAVD  240
LDAMASSFQH DGHGAAAAAA AQLIPLPSRT SLGPTTTTSA LSLLLQSPKF KEMIEQTSAA  300
ETTTSSTTTS SSSPSPPRPS LRQATKDDAS PQCSFPEDIQ TYFGCAAEDG AAVAGYTDVD  360
GLFFGDLAAY ASPAFHFELD L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-111AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3MXL30.0J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-102AP2 family protein