PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G29160.1
Common NameLOC102709392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 371aa    MW: 38354.7 Da    PI: 5.831
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G29160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.2e-3670169694
           TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg...... 88 
                    r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WL+qq+ pai+++tgt++ +a ++         ++sssss      g      
  OB08G29160.1  70 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLMQQSDPAIIAATGTGTVPAIATtvngvlriPTQSSSSS------Gpassav 160
                   6999********************************************************666663332222233222222222......1121122 PP

           TCP  89 ....kaaksa 94 
                       + ++++
  OB08G29160.1 161 vdgeE-SSAK 169
                   33321.1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.34372126IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-3072164IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEAQAQDKAE EGEEEGTRPH AQVGAVGGGG GGGAAAAMAV GAIPMNSWLV PKPEPVEFFG  60
GMAVVRKPPP RNRDRHTKVE GRGRRIRMPA ACAARIFQLT RELGHKSDGE TIRWLMQQSD  120
PAIIAATGTG TVPAIATTVN GVLRIPTQSS SSSGPASSAV VDGEESSAKR RRKLQPTRAV  180
AGASPLATAA PAAYYPVIGD PLLQGSAGAA ISVQSGLAPI TAAGAPPRLA PVFAVPPPGG  240
PAVAGGNRMI PQATAVWMVP QPAGAAGAGN QPTQFWAIQS APQLVNFAGA QFPTAINIAD  300
FQQQQQPQHP VSTTIVQHSN SGEHPVHVQF SGADSHEQQR RGRKEGSGVD HPEEDEDDDD  360
DEPVSDSSPE E
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G29160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659652.10.0PREDICTED: transcription factor PCF2
SwissprotA2YXQ10.0PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH60.0PCF2_ORYSJ; Transcription factor PCF2
TrEMBLJ3MUY50.0J3MUY5_ORYBR; Uncharacterized protein
STRINGOB08G29160.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-42TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]