PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G28320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 314aa    MW: 34543.7 Da    PI: 9.9958
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G28320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP67.33e-212394178
                  EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
           SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                  rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+
  OB08G28320.1  2 RFCQQCSRFHLLAEFDETKRSCRKRLDGHNRRRRKPQP 39
                  9**********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-10124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.255137IPR004333Transcription factor, SBP-box
PfamPF031105.9E-14136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-19242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRFCQQCSRF HLLAEFDETK RSCRKRLDGH NRRRRKPQPD PMSNAGYIAS PQGARFSPFV  60
TPRPEASWTG MMKTEESPYY THHHQIPLGI SSSRQQHFVG STSDGGRRFP FLQEGEISFG  120
AGAGCVPMDA AAAAPVGQPL LKTVAPPPPH HHHQQHHDGG RSSSSGASKM FSDGLTQVLD  180
SDCALSLLSA PANSSAIDVG GRMVVQPTEH IPMAQPLISG LQFGGGGGGS XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAPSSS  300
RRPASPARWW RVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-122365084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094691e-129AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695681.11e-167PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ6YZE81e-111SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBLJ3MUQ11e-167J3MUQ1_ORYBR; Uncharacterized protein
STRINGOB08G28320.11e-166(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-20SBP family protein