PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G26240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 138aa    MW: 14922.1 Da    PI: 4.5414
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G26240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1178.9e-3717230101
         NF-YC  30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                   +kade v+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdflvdivprde 
  OB08G26240.1   1 MKADEAVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEA 72 
                   9*********************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.4E-14154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.56E-23169IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.6E-29169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKADEAVRMI AAEAPVVFAR ACEMFILELT HRGWAHAEEN KRRTLQKSDI AAAIARTEVF  60
DFLVDIVPRD EAKDAEAAAA VAAGIPHPAA GLPATDPMAY YYVQPQASSR CINCPILGLG  120
ELVAIEEAFM VDSGHLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-3016951119HapE
4g92_C2e-3016951119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147RRTLQKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8289521e-139CT828952.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028G23, full insert sequence.
GenBankCP0126161e-139CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149641e-139AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0051481e-139AP005148.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1142B04.
GenBankAP0003641e-139AP000364.1 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0026F07.
GenBankAB2880441e-139AB288044.1 Oryza sativa Japonica Group OsHAP5D gene for HAP5 subunit of HAP complex, complete cds.
GenBankAK1085101e-139AK108510.1 Oryza sativa Japonica Group cDNA clone:002-144-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659536.13e-71PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015648381.18e-70PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ9SMP03e-42NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLJ3MU432e-97J3MU43_ORYBR; Uncharacterized protein
STRINGOB08G26240.16e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-39nuclear factor Y, subunit C2