PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G25720.1
Common NameLOC102716893
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 884aa    MW: 95298.9 Da    PI: 7.0636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G25720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031366386121
                   EEETTTTEEESSHHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                   ++Cp C+k+F  +s +  Hi 
  OB08G25720.1 366 FECPVCNKTFEEQSRYFGHIG 386
                   89************9999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-6196246IPR016177DNA-binding domain
PfamPF014294.6E-5201245IPR001739Methyl-CpG DNA binding
SMARTSM003550.98317340IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319340IPR007087Zinc finger, C2H2
SMARTSM003550.046366388IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369366393IPR007087Zinc finger, C2H2
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
METELLPVVD LRVLSQSDLD ALAAASAHAV SPRSCPDANP LPPLKIDRAI FNESAGSRKQ  60
TFSRLRFGTA SSSSGSPSPA AKPRGNDKED SFIAHHLRLL FARGDPSFLS PIDQPESQTL  120
ALPAPPSPDP DLLTTNSRGV SVDLVNLALL VDPYDAELGK RTAGMTSESE LMGFIASLAG  180
QWVSQRMRRK FVDAAFFGDH LPSGWRLQLG IMRKDHKAWL HCFSYVSPKG QQFGTCKEVS  240
AYLMSLLGYP DLKTGNIENS NMQQRDLCAE DGVNVLGVQH QIGSSMDNQS ILPAASVTFS  300
SHSRDEDERG ADATDSYYCQ ECNTTFHGQS AYAHHLIAFH KVSSKRRKIN KNVKFGEPII  360
GKDGKFECPV CNKTFEEQSR YFGHIGAHAK YHGLTPEAFL QTFAGKVGSE SFSELSFSLQ  420
ELTGSPQQIE KTNASETRSQ HHNSSTKHGG NATRGIDLLN SNCPDNFNGH NQTWCRPEEI  480
PPTTDAPSTW SYRNDVMDGA DRTVPRIAPQ TNDHMDRISG FAEATDFNDQ AGRHQVFRPS  540
SFGTANNCQG QIVDRAMATS KHAEVNNSIK ARDANHNSCL NTISFPIATA NNETSAALND  600
GNGSRITGKG FNGSFSNNDG AASAVFSNSG VNNKMPGSLG VADRSSVAAR SFNAGYVNDN  660
SASEANNIGN KNNSMVYQTN LTMRPISPCD LQLGFSGQKQ QMFPGYGELR PAASGSPQLG  720
SMARNSSIPS RPPQTQFGSM ARTDALPTGS SQPGSLARPN LVPTGFSQFA SMTRPATSVP  780
PADPSQFGGM GRQTIGTTSE PTLVLGYAPQ MVNGPPTQLG WDLSLSRMVS EGVIPVLCIW  840
CNSQFHHFGP IDGQQSGSFG FICPACKEKM AGNHNTPNNG PWQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659517.10.0PREDICTED: uncharacterized protein LOC102716893
TrEMBLJ3MTZ10.0J3MTZ1_ORYBR; Uncharacterized protein
STRINGOB08G25720.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419