PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G16090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 286aa    MW: 32005.7 Da    PI: 4.5543
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G16090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC150.63.1e-47115216199
         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                   ql++fw++q   ie++++fk  +lPlarik+i+kadedvkmi+ eaP+l++kace+fil+lt+rsw ++een+rrt++++di+aa+++tdifdflvd
  OB08G16090.1 115 QLQAFWADQmteIEQMSEFKLPNLPLARIKRIMKADEDVKMIAGEAPALFAKACEMFILDLTMRSWQQTEENRRRTVQRNDIEAAIKKTDIFDFLVD 211
                   89*****9988889*********************************************************************************** PP

         NF-YC  95 ivprd 99 
                   i  ++
  OB08G16090.1 212 IFDHQ 216
                   97665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.09E-30105209IPR009072Histone-fold
PfamPF008083.8E-20137200IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-33138213IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MATCGSALYG PHSMLHEHLN DPTAVAHWSA SLGMDHPKHN KANEGLTGDN HDDTYAVTTY  60
QPLVMVHGNA SGSAAFPTAS EGAPVYPASN PPQLPEQPQL AIQQVQQLQE QQKQQLQAFW  120
ADQMTEIEQM SEFKLPNLPL ARIKRIMKAD EDVKMIAGEA PALFAKACEM FILDLTMRSW  180
QQTEENRRRT VQRNDIEAAI KKTDIFDFLV DIFDHQEGGT GSQVASMNAM VSPYAPGVAF  240
PYELYPNQHP LVLMWPPQEQ HEQWPPQDYQ QQQQQQQDSG GGGQDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-341062129116HapE
4g92_C9e-341062129116HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193RRTVQRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659211.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG72e-48NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLJ3MR800.0J3MR80_ORYBR; Uncharacterized protein
STRINGOB08G16090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169771112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-44nuclear factor Y, subunit C4