PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G28610.1
Common NameLOC102722036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 259aa    MW: 28811.3 Da    PI: 7.0186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G28610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053373145
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45
                  +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L 
  OB07G28610.1 33 KRIHKSEREKIKRDKQNDLFSELGNLLEPD----RQNNGKACVLG 73
                  68899**********************996....34455555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1129101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-830101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-43087No hitNo description
PROSITE profilePS5088811.1533282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVPRDRVNAA AAADGRLVQS GIANKKCDRK APKRIHKSER EKIKRDKQND LFSELGNLLE  60
PDRQNNGKAC VLGETTRILK DLLSQVESLR KENSALKNES HYVALERNEL HDDNSMLRSE  120
ILDLQNEIRM RMEGSPVWSH VNTGPALRVS YPTNGMFPVQ HLPHLPVTTT VAFPQQQPVV  180
IEQHYATTPR ELQLFPESAT SEEDSEPSQE HGISDHVTRP QARYPAPGAT VPVNLFPVLP  240
GIQDQQCSSG TTGTSSKTA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G28610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658857.10.0PREDICTED: transcription factor bHLH47-like
RefseqXP_015695359.10.0PREDICTED: transcription factor bHLH47-like
SwissprotQ69V101e-165BH062_ORYSJ; Transcription factor BHLH062
TrEMBLJ3MN790.0J3MN79_ORYBR; Uncharacterized protein
STRINGOB07G28610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.34e-33bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]