PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 224aa    MW: 25483.2 Da    PI: 4.8785
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26024.38.9e-08227126
        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq 26
                  +C++C+vlr++C+++Cvl+p++   +
  OB07G26250.1  2 SCNGCRVLRKGCSEGCVLRPCLQWID 27
                  6********************96554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031957.8E-5224IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGPAPVFAP KXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXAGTPSMN SEGSVTTCGG GAGEREPELL NLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698133e-48AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
GenBankAP0051493e-48AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149633e-48AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-48CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-17LOB domain-containing protein 39