PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G23510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 172aa    MW: 19290.3 Da    PI: 9.5577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G23510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-111865454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  OB07G23510.1 18 SKACREKLRRDKLNERFLELGAVLEPG---KTPKMDKSAILNDAIRVMTEL 65
                  6789**********************9...9**************998777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-14881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-81270No hitNo description
PROSITE profilePS5088812.91465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-141788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-81865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-92071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATQHVSPRS ESVSQPSSKA CREKLRRDKL NERFLELGAV LEPGKTPKMD KSAILNDAIR  60
VMTELRSEAQ KLKESNQSLQ EKIKELKAEK NELRDEKQKL KAEKESLEQQ IKFLNARPSL  120
VPHPPVIPAA AFAAGQKLMM PVIGYPGFPM WQFMPPSDVD TTDDPKSCPP VA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G23510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1101961e-149AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047.
GenBankAB1102231e-149AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds.
GenBankAK0588891e-149AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence.
GenBankCT8305661e-149CT830566.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA057B18, full insert sequence.
GenBankEU8372601e-149EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694671.11e-116PREDICTED: transcription factor ILR3, partial
SwissprotQ9FH372e-68ILR3_ARATH; Transcription factor ILR3
TrEMBLJ3MLR91e-122J3MLR9_ORYBR; Uncharacterized protein
STRINGOB07G23510.11e-122(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-67bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]