PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G17730.1
Common NameLOC107304538
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 377aa    MW: 41423.5 Da    PI: 5.105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G17730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05106127223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +Cp Cgk+F++  ++  H+r+H
  OB07G17730.1 106 ECPVCGKRFRNDKSMFGHLRSH 127
                   6*******************99 PP

2zf-C2H213.50.00022257280123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   y+C++C++ Fs++  L  H+   H
  OB07G17730.1 257 YTCKHCNEEFSTHQALGGHMAGnH 280
                   9***************99998666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0048105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034105132IPR007087Zinc finger, C2H2
PfamPF139121.1E-4106127IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-8106127No hitNo description
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-8252276No hitNo description
PfamPF139122.2E-6256282IPR007087Zinc finger, C2H2
SMARTSM003550.0076257280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18257285IPR007087Zinc finger, C2H2
PROSITE patternPS000280259280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSKCRCILFW PSVVILQAVC CWLVVAGGNS SQQVVVAAAA SGQIGGAPEC LQDPRLSPMS  60
WHARDDLVGD DDDLADHGAA PAQQPEAEAA ADAEAGDVDL DGGEVECPVC GKRFRNDKSM  120
FGHLRSHPNR GYKGATPPLN LSTTPSSSLP AAVDDTLLLL PFRDSSNQSM LSVADVCLST  180
YEKMAACVMA TLRYRYRPRR QLQQPQAQAA AAGAGIGEVG TSSTMEGDVI HRDGRRKGKR  240
KLTKEPLREK ELKRRHYTCK HCNEEFSTHQ ALGGHMAGNH KEKRILKEAQ LARSAMILEQ  300
KQPDMNLGLK EEQPERSRLV LREKQPDVYQ DRVIDQTMDD DWEETEIDGS NAVPVAEEED  360
GHPPFGFDLN VEAPEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234240RRKGKRK
2234241RRKGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694606.10.0PREDICTED: uncharacterized protein LOC107304538
TrEMBLJ3MK410.0J3MK41_ORYBR; Uncharacterized protein
STRINGOB07G17730.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028