PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G34290.1
Common NameLOC102709287
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1160aa    MW: 128071 Da    PI: 6.5121
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G34290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.9e-23157258199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++++
  OB06G34290.1 157 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKQ 249
                   99*****************************954.4444.49************************************************..56888 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  OB06G34290.1 250 QLLLGIRRA 258
                   89****997 PP

2Auxin_resp1188e-39283366183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OB06G34290.1 283 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 366
                   79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43146286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41149272IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-19156248No hitNo description
PROSITE profilePS5086311.801157259IPR003340B3 DNA binding domain
PfamPF023621.2E-20157258IPR003340B3 DNA binding domain
SMARTSM010191.6E-22157259IPR003340B3 DNA binding domain
PfamPF065071.5E-33283366IPR010525Auxin response factor
PfamPF023094.7E-910241110IPR033389AUX/IAA domain
PROSITE profilePS5174527.5210251109IPR000270PB1 domain
SuperFamilySSF542775.69E-710371104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1160 aa     Download sequence    Send to blast
MMKQAQPQQQ QPPVTASSTV TATAAAVTSA MAAAAAVGSG CEGEKKAPAI NSELWHACAG  60
PLVSLPPAGS LVVYFPQGHS EQVAASMQKD VDAHVPSYPN LPSKLICLLH NVTLHADPET  120
DEVYAQMTLQ PVTSYGKEAL QLSELALKQA RPQTEFFCKT LTASDTSTHG GFSVPRRAAE  180
KIFPPLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS  240
VIFVRDEKQQ LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHAAANN SPFTIFYNPR  300
ASPTEFVIPF AKYQKAVYGN QISLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKNS  360
QWRNLQVGWD ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL  420
KRAMPWLGEE ICIKDPQTQN TIMPGLSLVQ WMNMNMQQSS SFANTAMQSD YLRSLSNPNM  480
QNLGAADLSR QLCLQNQLLQ QNNIQFNTPK LSQQMQPVNE LSKATIPLNQ LGVSTKPQEQ  540
IHDASNLARQ QPSMNHILPL SQAQASFGQA QVLVQNQMQQ QHASSTQGQQ PTTSQPLLLP  600
QQQQQQQQQQ KLLQQQQQQQ QLLLQQQQLQ QQQQLNKVPS QLPSLANQQL QLSDQQLQLQ  660
LLQKLQQQQQ SLLSQPGVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLPQQQ MMPQQSTRVP  720
SQNASLPPPV QQEPQQKLLQ KQAMLADTSE AAVPLTTSAN VISTMGSPLM TAGATHSVLT  780
EEIPSCSTSP STANGGHLLQ PILGRNKHCS MINTEKVPQP AAPMSVPSSL EAVTATPRMI  840
KESPKLNQNV KQTVVASKLA NAGAGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHPN  900
FPMSNFSQPQ MFKDAPPETE IHPPNTSNNA LFGINSDGQL GFPMGTDDFL SNGIDAAKYE  960
NHISTEIDNG YRIPKDAQQE ISSSMVSQSF GASDMAFNSI DSALNDGGFL NRSSWPPAPP  1020
LKRMRTFTKV YKRGAVGRSI DISQFSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH  1080
EDDILLLGDD PWEEFVGCVR CIRILSPQEV QQMSLEGCDL GNNSIPPNQA CSSSDGGNAW  1140
RARCDQNSGN PSNGSYEQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1704638747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G34290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656453.20.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLJ3MHD50.0J3MHD5_ORYBR; Auxin response factor
STRINGOB06G34290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]