PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G19430.1
Common NameLOC102715669
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 414aa    MW: 46677.1 Da    PI: 5.139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G19430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-33581971128
           NAM   1 lppGfrFhPtdeelvveyLkkk..vegkklelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 
                   lp+G++F+Ptd+el+++ L+k+  v +k++++ e +i++v+    i++++P++Lp  vk + +  +fF+++ k+y+tg+rk+r+++     + +W++
  OB06G19430.1  58 LPRGVKFDPTDQELLWHLLAKHgkVGAKPHPFIEeFIPTVEeddgICYTHPQKLP-GVKRDGSVSHFFHRTFKAYNTGTRKRRKINtddlgDVRWHK 153
                   799**************9988522666775443323544422345**********.677788899******************75545666899*** PP

           NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   tgk+k+v++ +g++ g+kk++v+y  + +  k+ekt+Wvmh+y+l
  OB06G19430.1 154 TGKTKPVVV-DGKHLGCKKIMVLYisTVKGGKPEKTNWVMHQYHL 197
                   *********.999***********7745677777*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3843216IPR003441NAC domain
PROSITE profilePS5100530.92158216IPR003441NAC domain
PfamPF023658.1E-1559197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAGTSWIIDS RRIATKIKNA SVSVDPSKQK WVSNPTKACP KCNHIIDNSD VVHQWPGLPR  60
GVKFDPTDQE LLWHLLAKHG KVGAKPHPFI EEFIPTVEED DGICYTHPQK LPGVKRDGSV  120
SHFFHRTFKA YNTGTRKRRK INTDDLGDVR WHKTGKTKPV VVDGKHLGCK KIMVLYISTV  180
KGGKPEKTNW VMHQYHLGTG EDEVEGQYVV SKLFYQQQFK PGEKNAQDIT SAYALESIVT  240
EDLPYIPPLP LEEHVYTNQE VPEKSETITD QGKETSEINN DDNAAEDVVH MSTEKPEDGD  300
NPSSQDPKWW EGESQFLFDS QQLADNLAIC DEFLQSQSQT SCGGDEPDKI KPRLAVYAQL  360
PKEDLKKDLE ECQKLDPSDS ANVDLDNASE FRLSQIEFSQ DSFTTAWPGG KLID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604340.0AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655990.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-145NAC8_ARATH; NAC domain-containing protein 8
TrEMBLJ3MD490.0J3MD49_ORYBR; Uncharacterized protein
STRINGOB06G19430.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-146NAC family protein